J4_7MSH_003

3D structure

PDB id

7MSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGACAAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

7MSH|1|A|G|1402, 7MSH|1|A|A|1403, 7MSH|1|A|C|1404, 7MSH|1|A|A|1405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MSH_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.3963

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7MSH|1|A|C|1401
7MSH|1|A|G|1402
7MSH|1|A|A|1403
7MSH|1|A|C|1404
7MSH|1|A|A|1405
7MSH|1|A|A|1406
7MSH|1|A|G|1407
*
7MSH|1|A|C|1425
7MSH|1|A|C|1426
*
7MSH|1|A|G|1880
7MSH|1|A|U|1881
7MSH|1|A|A|1882
7MSH|1|A|C|1883
*
7MSH|1|A|G|2247
7MSH|1|A|G|2248

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22