J4_7MSM_002

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GGAAG*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MSM_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1589

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7MSM|1|A|G|379
7MSM|1|A|G|380
7MSM|1|A|A|381
7MSM|1|A|A|382
7MSM|1|A|G|383
*
7MSM|1|A|U|399
7MSM|1|A|G|400
7MSM|1|A|C|401
7MSM|1|A|C|402
*
7MSM|1|A|G|406
7MSM|1|A|A|407
7MSM|1|A|C|408
*
7MSM|1|A|G|420
7MSM|1|A|G|421
7MSM|1|A|U|422
7MSM|1|A|A|423
7MSM|1|A|C|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24