J4_7MSZ_004

3D structure

PDB id

7MSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7MSZ|1|A|G|1472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MSZ_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1136

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

7MSZ|1|A|G|1441
7MSZ|1|A|G|1442
7MSZ|1|A|U|1443
7MSZ|1|A|U|1444
7MSZ|1|A|C|1445
*
7MSZ|1|A|G|1469
7MSZ|1|A|G|1470
7MSZ|1|A|U|1471
7MSZ|1|A|G|1472
7MSZ|1|A|A|1473
7MSZ|1|A|G|1474
*
7MSZ|1|A|C|1535
7MSZ|1|A|C|1536
*
7MSZ|1|A|G|1832
7MSZ|1|A|C|1833
7MSZ|1|A|C|1834
7MSZ|1|A|C|1835
7MSZ|1|A|G|1836
7MSZ|1|A|U|1837
7MSZ|1|A|A|1838
7MSZ|1|A|C|1839

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23