J4_7MT2_003

3D structure

PDB id

7MT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGACAAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

7MT2|1|A|G|1402, 7MT2|1|A|A|1403, 7MT2|1|A|C|1404, 7MT2|1|A|A|1405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MT2_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.405

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7MT2|1|A|C|1401
7MT2|1|A|G|1402
7MT2|1|A|A|1403
7MT2|1|A|C|1404
7MT2|1|A|A|1405
7MT2|1|A|A|1406
7MT2|1|A|G|1407
*
7MT2|1|A|C|1425
7MT2|1|A|C|1426
*
7MT2|1|A|G|1880
7MT2|1|A|U|1881
7MT2|1|A|A|1882
7MT2|1|A|C|1883
*
7MT2|1|A|G|2247
7MT2|1|A|G|2248

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22