3D structure

PDB id
7N1P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
7N1P|1|16|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7N1P_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.213
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7N1P|1|16|G|115
7N1P|1|16|A|116
7N1P|1|16|G|117
7N1P|1|16|U|118
7N1P|1|16|A|119
7N1P|1|16|A|120
7N1P|1|16|U|121
7N1P|1|16|G|122
*
7N1P|1|16|U|239
7N1P|1|16|G|240
*
7N1P|1|16|C|286
7N1P|1|16|U|287
7N1P|1|16|A|288
7N1P|1|16|G|289
*
7N1P|1|16|C|311
7N1P|1|16|C|312

Current chains

Chain 16
16S rRNA

Nearby chains

Chain SP
30S ribosomal protein S16
Chain SQ
30S ribosomal protein S17

Coloring options:


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