J4_7N1P_002

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7N1P|1|16|C|183, 7N1P|1|16|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N1P_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1579

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7N1P|1|16|G|142
7N1P|1|16|A|143
7N1P|1|16|G|144
*
7N1P|1|16|C|178
7N1P|1|16|A|179
7N1P|1|16|U|180
7N1P|1|16|A|181
7N1P|1|16|A|182
7N1P|1|16|C|183
7N1P|1|16|G|184
*
7N1P|1|16|C|193
7N1P|1|16|C|194
7N1P|1|16|A|195
7N1P|1|16|A|196
7N1P|1|16|A|197
7N1P|1|16|G|198
*
7N1P|1|16|U|219
7N1P|1|16|G|220
7N1P|1|16|C|221

Current chains

Chain 16

16S rRNA

Nearby chains

Chain ST

30S ribosomal protein S20