J4_7N1P_004

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7N1P|1|23|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N1P_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1267

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7N1P|1|23|C|268
7N1P|1|23|C|269
*
7N1P|1|23|G|370
7N1P|1|23|A|371
7N1P|1|23|G|372
7N1P|1|23|U|373
7N1P|1|23|A|374
7N1P|1|23|G|375
*
7N1P|1|23|U|399
7N1P|1|23|G|400
7N1P|1|23|A|401
7N1P|1|23|A|402
7N1P|1|23|U|403
7N1P|1|23|A|404
7N1P|1|23|U|405
7N1P|1|23|G|406
*
7N1P|1|23|C|421
7N1P|1|23|A|422
7N1P|1|23|A|423
7N1P|1|23|G|424

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LI

50S ribosomal protein L9

Chain Lb

50S ribosomal protein L28