J4_7N1P_007

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7N1P|1|23|G|1271, 7N1P|1|23|A|1272, 7N1P|1|23|U|1273, 7N1P|1|23|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N1P_007 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0543

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7N1P|1|23|C|1270
7N1P|1|23|G|1271
7N1P|1|23|A|1272
7N1P|1|23|U|1273
7N1P|1|23|A|1274
7N1P|1|23|A|1275
7N1P|1|23|A|1276
*
7N1P|1|23|U|1294
7N1P|1|23|C|1295
*
7N1P|1|23|G|1645
7N1P|1|23|C|1646
7N1P|1|23|U|1647
7N1P|1|23|U|1648
*
7N1P|1|23|A|2009
7N1P|1|23|G|2010

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LQ

50S ribosomal protein L17

Chain LV

50S ribosomal protein L22

Chain Lf

50S ribosomal protein L32