J4_7N2V_002

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7N2V|1|16|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N2V_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0896

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7N2V|1|16|G|142
7N2V|1|16|A|143
7N2V|1|16|G|144
*
7N2V|1|16|C|178
7N2V|1|16|A|179
7N2V|1|16|U|180
7N2V|1|16|A|181
7N2V|1|16|A|182
7N2V|1|16|C|183
7N2V|1|16|G|184
*
7N2V|1|16|C|193
7N2V|1|16|C|194
7N2V|1|16|A|195
7N2V|1|16|A|196
7N2V|1|16|A|197
7N2V|1|16|G|198
*
7N2V|1|16|U|219
7N2V|1|16|G|220
7N2V|1|16|C|221

Current chains

Chain 16

16S rRNA

Nearby chains

Chain ST

30S ribosomal protein S20