J4_7N2V_004

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7N2V|1|23|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N2V_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1239

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7N2V|1|23|C|268
7N2V|1|23|C|269
*
7N2V|1|23|G|370
7N2V|1|23|A|371
7N2V|1|23|G|372
7N2V|1|23|U|373
7N2V|1|23|A|374
7N2V|1|23|G|375
*
7N2V|1|23|U|399
7N2V|1|23|G|400
7N2V|1|23|A|401
7N2V|1|23|A|402
7N2V|1|23|U|403
7N2V|1|23|A|404
7N2V|1|23|U|405
7N2V|1|23|G|406
*
7N2V|1|23|C|421
7N2V|1|23|A|422
7N2V|1|23|A|423
7N2V|1|23|G|424

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LI

50S ribosomal protein L9

Chain Lb

50S ribosomal protein L28