J4_7N30_004

3D structure

PDB id

7N30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7N30|1|23|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N30_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1292

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7N30|1|23|C|268
7N30|1|23|C|269
*
7N30|1|23|G|370
7N30|1|23|A|371
7N30|1|23|G|372
7N30|1|23|U|373
7N30|1|23|A|374
7N30|1|23|G|375
*
7N30|1|23|U|399
7N30|1|23|G|400
7N30|1|23|A|401
7N30|1|23|A|402
7N30|1|23|U|403
7N30|1|23|A|404
7N30|1|23|U|405
7N30|1|23|G|406
*
7N30|1|23|C|421
7N30|1|23|A|422
7N30|1|23|A|423
7N30|1|23|G|424

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LI

50S ribosomal protein L9

Chain Lb

50S ribosomal protein L28