J4_7N30_014

3D structure

PDB id

7N30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N30_014 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0526

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7N30|1|23|G|2643
7N30|1|23|G|2644
7N30|1|23|G|2645
7N30|1|23|C|2646
*
7N30|1|23|G|2674
7N30|1|23|A|2675
7N30|1|23|C|2676
*
7N30|1|23|G|2731
7N30|1|23|G|2732
7N30|1|23|A|2733
7N30|1|23|A|2734
7N30|1|23|G|2735
*
7N30|1|23|U|2769
7N30|1|23|G|2770
7N30|1|23|C|2771

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LM

50S ribosomal protein L13

Chain LN

50S ribosomal protein L14