J4_7N8B_002

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7N8B_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1012

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7N8B|1|A1|C|185
7N8B|1|A1|U|186
7N8B|1|A1|A|187
7N8B|1|A1|U|188
7N8B|1|A1|G|189
*
7N8B|1|A1|C|205
7N8B|1|A1|G|206
7N8B|1|A1|U|207
7N8B|1|A1|C|208
*
7N8B|1|A1|G|212
7N8B|1|A1|A|213
7N8B|1|A1|G|214
*
7N8B|1|A1|C|226
7N8B|1|A1|G|227
7N8B|1|A1|U|228
7N8B|1|A1|G|229
7N8B|1|A1|U|230
7N8B|1|A1|G|231

Current chains

Chain A1

25S

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4-A

Chain AY

60S ribosomal protein L26-A