J4_7N8B_011
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7N8B|1|B5|A|623, 7N8B|1|B5|A|1026, 7N8B|1|B5|C|1028, 7N8B|1|B5|U|1029, 7N8B|1|B5|A|1030, 7N8B|1|B5|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7N8B_011 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0841
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7N8B|1|B5|A|622
7N8B|1|B5|A|623
7N8B|1|B5|G|624
*
7N8B|1|B5|C|975
7N8B|1|B5|G|976
7N8B|1|B5|A|977
7N8B|1|B5|A|978
7N8B|1|B5|A|979
7N8B|1|B5|G|980
*
7N8B|1|B5|C|1021
7N8B|1|B5|C|1022
7N8B|1|B5|A|1023
7N8B|1|B5|U|1024
7N8B|1|B5|A|1025
7N8B|1|B5|A|1026
7N8B|1|B5|A|1027
7N8B|1|B5|C|1028
7N8B|1|B5|U|1029
7N8B|1|B5|A|1030
7N8B|1|B5|U|1031
7N8B|1|B5|G|1032
*
7N8B|1|B5|U|1103
7N8B|1|B5|U|1104
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain BW
- 40S ribosomal protein S22-A
- Chain BX
- 40S ribosomal protein S23-A
- Chain Ba
- 40S ribosomal protein S26-B
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