J4_7NAR_001

3D structure

PDB id

7NAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7NAR|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NAR_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2824

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7NAR|1|A|G|115
7NAR|1|A|A|116
7NAR|1|A|G|117
7NAR|1|A|U|118
7NAR|1|A|A|119
7NAR|1|A|A|120
7NAR|1|A|U|121
7NAR|1|A|G|122
*
7NAR|1|A|U|239
7NAR|1|A|G|240
*
7NAR|1|A|C|286
7NAR|1|A|U|287
7NAR|1|A|A|288
7NAR|1|A|G|289
*
7NAR|1|A|C|311
7NAR|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17