J4_7NAS_001

3D structure

PDB id

7NAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7NAS|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NAS_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3336

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7NAS|1|A|G|115
7NAS|1|A|A|116
7NAS|1|A|G|117
7NAS|1|A|U|118
7NAS|1|A|A|119
7NAS|1|A|A|120
7NAS|1|A|U|121
7NAS|1|A|G|122
*
7NAS|1|A|U|239
7NAS|1|A|G|240
*
7NAS|1|A|C|286
7NAS|1|A|U|287
7NAS|1|A|A|288
7NAS|1|A|G|289
*
7NAS|1|A|C|311
7NAS|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17