J4_7NAS_002

3D structure

PDB id

7NAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7NAS|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NAS_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1418

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7NAS|1|A|G|142
7NAS|1|A|A|143
7NAS|1|A|G|144
*
7NAS|1|A|C|178
7NAS|1|A|A|179
7NAS|1|A|U|180
7NAS|1|A|A|181
7NAS|1|A|A|182
7NAS|1|A|C|183
7NAS|1|A|G|184
*
7NAS|1|A|C|193
7NAS|1|A|C|194
7NAS|1|A|A|195
7NAS|1|A|A|196
7NAS|1|A|A|197
7NAS|1|A|G|198
*
7NAS|1|A|U|219
7NAS|1|A|G|220
7NAS|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20