J4_7NAT_001

3D structure

PDB id

7NAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7NAT|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NAT_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3336

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7NAT|1|A|G|115
7NAT|1|A|A|116
7NAT|1|A|G|117
7NAT|1|A|U|118
7NAT|1|A|A|119
7NAT|1|A|A|120
7NAT|1|A|U|121
7NAT|1|A|G|122
*
7NAT|1|A|U|239
7NAT|1|A|G|240
*
7NAT|1|A|C|286
7NAT|1|A|U|287
7NAT|1|A|A|288
7NAT|1|A|G|289
*
7NAT|1|A|C|311
7NAT|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17