J4_7NAV_004

3D structure

PDB id

7NAV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7NAV|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NAV_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2009

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7NAV|1|A|G|142
7NAV|1|A|A|143
7NAV|1|A|G|144
*
7NAV|1|A|C|178
7NAV|1|A|A|179
7NAV|1|A|U|180
7NAV|1|A|A|181
7NAV|1|A|A|182
7NAV|1|A|C|183
7NAV|1|A|G|184
*
7NAV|1|A|C|193
7NAV|1|A|C|194
7NAV|1|A|A|195
7NAV|1|A|A|196
7NAV|1|A|A|197
7NAV|1|A|G|198
*
7NAV|1|A|U|219
7NAV|1|A|G|220
7NAV|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20