J4_7NBU_001

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7NBU|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NBU_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2969

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7NBU|1|A|G|115
7NBU|1|A|A|116
7NBU|1|A|G|117
7NBU|1|A|U|118
7NBU|1|A|A|119
7NBU|1|A|A|120
7NBU|1|A|U|121
7NBU|1|A|G|122
*
7NBU|1|A|U|239
7NBU|1|A|G|240
*
7NBU|1|A|C|286
7NBU|1|A|U|287
7NBU|1|A|A|288
7NBU|1|A|G|289
*
7NBU|1|A|C|311
7NBU|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17