J4_7NBU_002

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7NBU|1|A|C|183, 7NBU|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NBU_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1644

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7NBU|1|A|G|142
7NBU|1|A|A|143
7NBU|1|A|G|144
*
7NBU|1|A|C|178
7NBU|1|A|A|179
7NBU|1|A|U|180
7NBU|1|A|A|181
7NBU|1|A|A|182
7NBU|1|A|C|183
7NBU|1|A|G|184
*
7NBU|1|A|C|193
7NBU|1|A|C|194
7NBU|1|A|A|195
7NBU|1|A|A|196
7NBU|1|A|A|197
7NBU|1|A|G|198
*
7NBU|1|A|U|219
7NBU|1|A|G|220
7NBU|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20