J4_7NBU_005

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7NBU|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NBU_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.121

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7NBU|1|a|C|268
7NBU|1|a|C|269
*
7NBU|1|a|G|370
7NBU|1|a|A|371
7NBU|1|a|G|372
7NBU|1|a|U|373
7NBU|1|a|A|374
7NBU|1|a|G|375
*
7NBU|1|a|U|399
7NBU|1|a|G|400
7NBU|1|a|A|401
7NBU|1|a|A|402
7NBU|1|a|U|403
7NBU|1|a|A|404
7NBU|1|a|U|405
7NBU|1|a|G|406
*
7NBU|1|a|C|421
7NBU|1|a|A|422
7NBU|1|a|A|423
7NBU|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28