J4_7NBU_009

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7NBU|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NBU_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0721

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NBU|1|a|U|1313
7NBU|1|a|C|1314
*
7NBU|1|a|G|1338
7NBU|1|a|G|1339
7NBU|1|a|U|1340
7NBU|1|a|G|1341
7NBU|1|a|A|1342
7NBU|1|a|G|1343
*
7NBU|1|a|C|1404
7NBU|1|a|U|1405
*
7NBU|1|a|A|1597
7NBU|1|a|A|1598
7NBU|1|a|U|1599
7NBU|1|a|C|1600
7NBU|1|a|G|1601
7NBU|1|a|U|1602
7NBU|1|a|A|1603

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23