J4_7NFX_003

3D structure

PDB id

7NFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7NFX|1|5|A|2366, 7NFX|1|5|U|2369, 7NFX|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NFX|1|5|C|2365
7NFX|1|5|A|2366
7NFX|1|5|A|2367
7NFX|1|5|A|2368
7NFX|1|5|U|2369
7NFX|1|5|A|2370
7NFX|1|5|U|2371
*
7NFX|1|5|A|2389
7NFX|1|5|G|2390
7NFX|1|5|G|2391
*
7NFX|1|5|C|2824
7NFX|1|5|A|2825
7NFX|1|5|U|2826
7NFX|1|5|G|2827
7NFX|1|5|U|2828
7NFX|1|5|U|2829
*
7NFX|1|5|A|3856
7NFX|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

60S RIBOSOMAL PROTEIN EL19

Chain d

eL31