J4_7NHK_005
3D structure
- PDB id
- 7NHK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUUC*GGUUAG*CC*GCCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7NHK|1|A|U|1376
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NHK_005 not in the Motif Atlas
- Homologous match to J4_4WF9_005
- Geometric discrepancy: 0.088
- The information below is about J4_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.2
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
7NHK|1|A|G|1345
7NHK|1|A|U|1346
7NHK|1|A|U|1347
7NHK|1|A|U|1348
7NHK|1|A|C|1349
*
7NHK|1|A|G|1373
7NHK|1|A|G|1374
7NHK|1|A|U|1375
7NHK|1|A|U|1376
7NHK|1|A|A|1377
7NHK|1|A|G|1378
*
7NHK|1|A|C|1439
7NHK|1|A|C|1440
*
7NHK|1|A|G|1639
7NHK|1|A|C|1640
7NHK|1|A|C|1641
7NHK|1|A|C|1642
7NHK|1|A|G|1643
7NHK|1|A|U|1644
7NHK|1|A|A|1645
7NHK|1|A|C|1646
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain W
- 50S ribosomal protein L23
Coloring options: