J4_7NHL_003

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CGUAG*CGAGU*GCGUUUAG

Length

22 nucleotides

Bulged bases

7NHL|1|A|U|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHL_003 not in the Motif Atlas

Homologous match to J4_4WF9_003

Geometric discrepancy: 0.1677

The information below is about J4_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69347.1

Basepair signature

cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7NHL|1|A|C|644
7NHL|1|A|A|645
7NHL|1|A|A|646
7NHL|1|A|G|647
*
7NHL|1|A|C|669
7NHL|1|A|G|670
7NHL|1|A|U|671
7NHL|1|A|A|672
7NHL|1|A|G|673
*
7NHL|1|A|C|680
7NHL|1|A|G|681
7NHL|1|A|A|682
7NHL|1|A|G|683
7NHL|1|A|U|684
*
7NHL|1|A|G|694
7NHL|1|A|C|695
7NHL|1|A|G|696
7NHL|1|A|U|697
7NHL|1|A|U|698
7NHL|1|A|U|699
7NHL|1|A|A|700
7NHL|1|A|G|701

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15