J4_7NHL_005

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7NHL|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHL_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.086

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

7NHL|1|A|G|1347
7NHL|1|A|U|1348
7NHL|1|A|U|1349
7NHL|1|A|U|1350
7NHL|1|A|C|1351
*
7NHL|1|A|G|1375
7NHL|1|A|G|1376
7NHL|1|A|U|1377
7NHL|1|A|U|1378
7NHL|1|A|A|1379
7NHL|1|A|G|1380
*
7NHL|1|A|C|1441
7NHL|1|A|C|1442
*
7NHL|1|A|G|1641
7NHL|1|A|C|1642
7NHL|1|A|C|1643
7NHL|1|A|C|1644
7NHL|1|A|G|1645
7NHL|1|A|U|1646
7NHL|1|A|A|1647
7NHL|1|A|C|1648

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23