J4_7NHL_008

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHL_008 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0768

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7NHL|1|A|G|1799
7NHL|1|A|A|1800
7NHL|1|A|C|1801
7NHL|1|A|U|1802
7NHL|1|A|G|1803
*
7NHL|1|A|C|1815
7NHL|1|A|A|1816
7NHL|1|A|C|1817
7NHL|1|A|A|1818
7NHL|1|A|G|1819
*
7NHL|1|A|U|1854
7NHL|1|A|G|1855
7NHL|1|A|A|1856
7NHL|1|A|C|1857
*
7NHL|1|A|G|2002
7NHL|1|A|U|2003
7NHL|1|A|A|2004
7NHL|1|A|A|2005
7NHL|1|A|C|2006

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2