J4_7NHM_001

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7NHM|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHM_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.122

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7NHM|1|A|C|271
7NHM|1|A|C|272
*
7NHM|1|A|G|416
7NHM|1|A|A|417
7NHM|1|A|G|418
7NHM|1|A|U|419
7NHM|1|A|A|420
7NHM|1|A|C|421
*
7NHM|1|A|G|445
7NHM|1|A|G|446
7NHM|1|A|A|447
7NHM|1|A|A|448
7NHM|1|A|U|449
7NHM|1|A|C|450
7NHM|1|A|U|451
7NHM|1|A|G|452
*
7NHM|1|A|U|467
7NHM|1|A|A|468
7NHM|1|A|A|469
7NHM|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28