J4_7NHM_002

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHM_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0975

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7NHM|1|A|C|340
7NHM|1|A|G|341
7NHM|1|A|A|342
7NHM|1|A|A|343
7NHM|1|A|U|344
*
7NHM|1|A|A|359
7NHM|1|A|A|360
7NHM|1|A|U|361
7NHM|1|A|C|362
*
7NHM|1|A|G|366
7NHM|1|A|A|367
7NHM|1|A|A|368
*
7NHM|1|A|U|380
7NHM|1|A|G|381
7NHM|1|A|U|382
7NHM|1|A|A|383
7NHM|1|A|G|384

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24