J4_7NHN_005

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7NHN|1|A|U|1385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHN_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0953

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

7NHN|1|A|G|1354
7NHN|1|A|U|1355
7NHN|1|A|U|1356
7NHN|1|A|U|1357
7NHN|1|A|C|1358
*
7NHN|1|A|G|1382
7NHN|1|A|G|1383
7NHN|1|A|U|1384
7NHN|1|A|U|1385
7NHN|1|A|A|1386
7NHN|1|A|G|1387
*
7NHN|1|A|C|1448
7NHN|1|A|C|1449
*
7NHN|1|A|G|1646
7NHN|1|A|C|1647
7NHN|1|A|C|1648
7NHN|1|A|C|1649
7NHN|1|A|G|1650
7NHN|1|A|U|1651
7NHN|1|A|A|1652
7NHN|1|A|C|1653

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23