J4_7NHN_007

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NHN_007 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0714

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7NHN|1|A|G|1805
7NHN|1|A|A|1806
7NHN|1|A|C|1807
7NHN|1|A|U|1808
7NHN|1|A|G|1809
*
7NHN|1|A|C|1821
7NHN|1|A|A|1822
7NHN|1|A|C|1823
7NHN|1|A|A|1824
7NHN|1|A|G|1825
*
7NHN|1|A|U|1860
7NHN|1|A|G|1861
7NHN|1|A|A|1862
7NHN|1|A|C|1863
*
7NHN|1|A|G|2008
7NHN|1|A|C|2009
7NHN|1|A|A|2010
7NHN|1|A|A|2011
7NHN|1|A|C|2012

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2