J4_7NHN_008
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAAG
- Length
- 21 nucleotides
- Bulged bases
- 7NHN|1|A|A|2004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NHN_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1009
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
7NHN|1|A|C|1866
7NHN|1|A|U|1867
7NHN|1|A|G|1868
*
7NHN|1|A|C|1938
7NHN|1|A|G|1939
*
7NHN|1|A|C|1957
7NHN|1|A|C|1958
7NHN|1|A|U|1959
7NHN|1|A|A|1960
7NHN|1|A|A|1961
7NHN|1|A|G|1962
7NHN|1|A|G|1963
7NHN|1|A|U|1964
7NHN|1|A|A|1965
7NHN|1|A|G|1966
*
7NHN|1|A|C|2000
7NHN|1|A|G|2001
7NHN|1|A|A|2002
7NHN|1|A|A|2003
7NHN|1|A|A|2004
7NHN|1|A|G|2005
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- Lmo0919 protein
- Chain D
- Transfer RNA; tRNA
- Chain G
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: