J4_7NHN_010
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGC*GAC*GGCAG*CCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NHN_010 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.274
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7NHN|1|A|G|2676
7NHN|1|A|A|2677
7NHN|1|A|G|2678
7NHN|1|A|C|2679
*
7NHN|1|A|G|2707
7NHN|1|A|A|2708
7NHN|1|A|C|2709
*
7NHN|1|A|G|2764
7NHN|1|A|G|2765
7NHN|1|A|C|2766
7NHN|1|A|A|2767
7NHN|1|A|G|2768
*
7NHN|1|A|C|2802
7NHN|1|A|C|2803
7NHN|1|A|C|2804
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain H
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
- Chain N
- 50S ribosomal protein L14
Coloring options: