J4_7NRC_001

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

7NRC|1|LA|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NRC_001 not in the Motif Atlas

Homologous match to J4_8P9A_012

Geometric discrepancy: 0.1204

The information below is about J4_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7NRC|1|LA|U|112
7NRC|1|LA|C|113
*
7NRC|1|LA|G|267
7NRC|1|LA|A|268
7NRC|1|LA|G|269
7NRC|1|LA|U|270
7NRC|1|LA|C|271
7NRC|1|LA|G|272
*
7NRC|1|LA|C|293
7NRC|1|LA|U|294
7NRC|1|LA|A|295
7NRC|1|LA|A|296
7NRC|1|LA|G|297
7NRC|1|LA|U|298
7NRC|1|LA|G|299
*
7NRC|1|LA|U|316
7NRC|1|LA|A|317
7NRC|1|LA|A|318
7NRC|1|LA|A|319

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain LP

60S ribosomal protein L15-A

Chain Lj

60S ribosomal protein L35-A

Chain Lk

60S ribosomal protein L36-A