3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUAUG*CGUC*GAG*CGUGUG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7NRC_002 not in the Motif Atlas
Homologous match to J4_8P9A_013
Geometric discrepancy: 0.1134
The information below is about J4_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_12410.1
Basepair signature
cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7NRC|1|LA|C|185
7NRC|1|LA|U|186
7NRC|1|LA|A|187
7NRC|1|LA|U|188
7NRC|1|LA|G|189
*
7NRC|1|LA|C|205
7NRC|1|LA|G|206
7NRC|1|LA|U|207
7NRC|1|LA|C|208
*
7NRC|1|LA|G|212
7NRC|1|LA|A|213
7NRC|1|LA|G|214
*
7NRC|1|LA|C|226
7NRC|1|LA|G|227
7NRC|1|LA|U|228
7NRC|1|LA|G|229
7NRC|1|LA|U|230
7NRC|1|LA|G|231

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LC
5.8S ribosomal RNA; 5.8S rRNA
Chain LF
60S ribosomal protein L4-A
Chain La
60S ribosomal protein L26-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4085 s