J4_7NRC_002

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NRC_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1134

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7NRC|1|LA|C|185
7NRC|1|LA|U|186
7NRC|1|LA|A|187
7NRC|1|LA|U|188
7NRC|1|LA|G|189
*
7NRC|1|LA|C|205
7NRC|1|LA|G|206
7NRC|1|LA|U|207
7NRC|1|LA|C|208
*
7NRC|1|LA|G|212
7NRC|1|LA|A|213
7NRC|1|LA|G|214
*
7NRC|1|LA|C|226
7NRC|1|LA|G|227
7NRC|1|LA|U|228
7NRC|1|LA|G|229
7NRC|1|LA|U|230
7NRC|1|LA|G|231

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A