J4_7NRC_002
3D structure
- PDB id
- 7NRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NRC_002 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.1134
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_12410.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NRC|1|LA|C|185
7NRC|1|LA|U|186
7NRC|1|LA|A|187
7NRC|1|LA|U|188
7NRC|1|LA|G|189
*
7NRC|1|LA|C|205
7NRC|1|LA|G|206
7NRC|1|LA|U|207
7NRC|1|LA|C|208
*
7NRC|1|LA|G|212
7NRC|1|LA|A|213
7NRC|1|LA|G|214
*
7NRC|1|LA|C|226
7NRC|1|LA|G|227
7NRC|1|LA|U|228
7NRC|1|LA|G|229
7NRC|1|LA|U|230
7NRC|1|LA|G|231
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
Coloring options: