J4_7NRC_003

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

7NRC|1|LA|A|1452, 7NRC|1|LA|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NRC_003 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.103

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRC|1|LA|C|1451
7NRC|1|LA|A|1452
7NRC|1|LA|A|1453
7NRC|1|LA|A|1454
7NRC|1|LA|U|1455
7NRC|1|LA|A|1456
7NRC|1|LA|U|1457
*
7NRC|1|LA|A|1475
7NRC|1|LA|G|1476
*
7NRC|1|LA|U|1877
7NRC|1|LA|G|1878
7NRC|1|LA|A|1879
7NRC|1|LA|U|1880
*
7NRC|1|LA|A|2352
7NRC|1|LA|G|2353

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LR

60S ribosomal protein L17-A

Chain LT

60S ribosomal protein L19-A

Chain Lf

60S ribosomal protein L31-A