3D structure

PDB id
7NRC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
7NRC|1|LA|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7NRC_004 not in the Motif Atlas
Homologous match to J4_8C3A_004
Geometric discrepancy: 0.0626
The information below is about J4_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NRC|1|LA|G|1492
7NRC|1|LA|G|1493
7NRC|1|LA|U|1494
7NRC|1|LA|U|1495
7NRC|1|LA|C|1496
*
7NRC|1|LA|G|1520
7NRC|1|LA|G|1521
7NRC|1|LA|U|1522
7NRC|1|LA|U|1523
7NRC|1|LA|A|1524
7NRC|1|LA|G|1525
*
7NRC|1|LA|C|1614
7NRC|1|LA|C|1615
*
7NRC|1|LA|G|1829
7NRC|1|LA|G|1830
7NRC|1|LA|U|1831
7NRC|1|LA|C|1832
7NRC|1|LA|G|1833
7NRC|1|LA|U|1834
7NRC|1|LA|A|1835
7NRC|1|LA|C|1836

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LC
5.8S ribosomal RNA; 5.8S rRNA
Chain LT
60S ribosomal protein L19-A
Chain LZ
60S ribosomal protein L25
Chain Li
60S ribosomal protein L34-A
Chain Ll
60S ribosomal protein L37-A
Chain Lm
60S ribosomal protein L38
Chain Ln
60S ribosomal protein L39

Coloring options:


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