J4_7NRC_014

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAG*CA*UGGUCG*CA

Length

14 nucleotides

Bulged bases

7NRC|1|Sm|U|8, 7NRC|1|Sm|U|47, 7NRC|1|Sm|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NRC_014 not in the Motif Atlas

Homologous match to J4_4QEI_001

Geometric discrepancy: 0.3424

The information below is about J4_4QEI_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_72305.5

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

7NRC|1|Sm|U|7
7NRC|1|Sm|U|8
7NRC|1|Sm|A|9
7NRC|1|Sm|G|10
*
7NRC|1|Sm|C|25
7NRC|1|Sm|A|26
*
7NRC|1|Sm|U|44
7NRC|1|Sm|G|45
7NRC|1|Sm|G|46
7NRC|1|Sm|U|47
7NRC|1|Sm|C|48
7NRC|1|Sm|G|49
*
7NRC|1|Sm|C|65
7NRC|1|Sm|A|66

Current chains

Chain Sm

tRNA (76-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain So

Ribosome-interacting GTPase 2