J4_7NRD_003

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

7NRD|1|LA|A|1452, 7NRD|1|LA|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NRD_003 not in the Motif Atlas

Homologous match to J4_8P9A_014

Geometric discrepancy: 0.223

The information below is about J4_8P9A_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_34212.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7NRD|1|LA|C|1451
7NRD|1|LA|A|1452
7NRD|1|LA|A|1453
7NRD|1|LA|A|1454
7NRD|1|LA|U|1455
7NRD|1|LA|A|1456
7NRD|1|LA|U|1457
*
7NRD|1|LA|A|1475
7NRD|1|LA|G|1476
*
7NRD|1|LA|U|1877
7NRD|1|LA|G|1878
7NRD|1|LA|A|1879
7NRD|1|LA|U|1880
*
7NRD|1|LA|A|2352
7NRD|1|LA|G|2353

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LR

60S ribosomal protein L17-A

Chain LT

60S ribosomal protein L19-A

Chain Lf

60S ribosomal protein L31-A