J4_7NRD_007
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7NRD|1|LA|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NRD_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1697
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|LA|C|2192
7NRD|1|LA|U|2193
7NRD|1|LA|G|2194
*
7NRD|1|LA|C|2248
7NRD|1|LA|G|2249
*
7NRD|1|LA|C|2267
7NRD|1|LA|U|2268
7NRD|1|LA|U|2269
7NRD|1|LA|A|2270
7NRD|1|LA|A|2271
7NRD|1|LA|G|2272
7NRD|1|LA|G|2273
7NRD|1|LA|U|2274
7NRD|1|LA|A|2275
7NRD|1|LA|G|2276
*
7NRD|1|LA|U|2310
7NRD|1|LA|G|2311
7NRD|1|LA|A|2312
7NRD|1|LA|A|2313
7NRD|1|LA|U|2314
7NRD|1|LA|G|2315
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain Lp
- 60S ribosomal protein L41-B
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Sm
- Transfer RNA; tRNA
Coloring options: