J4_7NRD_008
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7NRD_008 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1496
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7NRD|1|LA|C|2654
7NRD|1|LA|U|2655
7NRD|1|LA|A|2656
7NRD|1|LA|A|2657
7NRD|1|LA|G|2658
*
7NRD|1|LA|U|2712
7NRD|1|LA|U|2713
7NRD|1|LA|G|2714
7NRD|1|LA|A|2715
7NRD|1|LA|U|2716
*
7NRD|1|LA|A|2740
7NRD|1|LA|C|2741
7NRD|1|LA|C|2742
*
7NRD|1|LA|G|2751
7NRD|1|LA|U|2752
7NRD|1|LA|G|2753
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LG
- 60S ribosomal protein L5
- Chain LV
- 60S ribosomal protein L21-A
- Chain Ld
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein L42-A
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