J4_7NSI_007

3D structure

PDB id

7NSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7NSI|1|BA|U|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSI_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1599

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

7NSI|1|BA|C|876
7NSI|1|BA|U|877
7NSI|1|BA|G|878
*
7NSI|1|BA|C|901
7NSI|1|BA|C|902
*
7NSI|1|BA|G|919
7NSI|1|BA|C|920
7NSI|1|BA|A|921
7NSI|1|BA|A|922
7NSI|1|BA|A|923
7NSI|1|BA|G|924
7NSI|1|BA|G|925
7NSI|1|BA|U|926
7NSI|1|BA|A|927
7NSI|1|BA|G|928
*
7NSI|1|BA|U|962
7NSI|1|BA|G|963
7NSI|1|BA|A|964
7NSI|1|BA|A|965
7NSI|1|BA|U|966
7NSI|1|BA|G|967

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain An

Aurora kinase A interacting protein 1

Chain BD

Ribosomal_L2_C domain-containing protein