J4_7NSO_001

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7NSO|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSO_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1369

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7NSO|1|A|C|268
7NSO|1|A|C|269
*
7NSO|1|A|G|370
7NSO|1|A|A|371
7NSO|1|A|G|372
7NSO|1|A|U|373
7NSO|1|A|A|374
7NSO|1|A|G|375
*
7NSO|1|A|U|399
7NSO|1|A|G|400
7NSO|1|A|A|401
7NSO|1|A|A|402
7NSO|1|A|U|403
7NSO|1|A|A|404
7NSO|1|A|U|405
7NSO|1|A|G|406
*
7NSO|1|A|C|421
7NSO|1|A|A|422
7NSO|1|A|A|423
7NSO|1|A|G|424

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28