J4_7NSO_004

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7NSO|1|A|G|1271, 7NSO|1|A|A|1272, 7NSO|1|A|U|1273, 7NSO|1|A|A|1275, 7NSO|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSO_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.082

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7NSO|1|A|C|1270
7NSO|1|A|G|1271
7NSO|1|A|A|1272
7NSO|1|A|U|1273
7NSO|1|A|A|1274
7NSO|1|A|A|1275
7NSO|1|A|A|1276
*
7NSO|1|A|U|1294
7NSO|1|A|C|1295
*
7NSO|1|A|G|1645
7NSO|1|A|C|1646
7NSO|1|A|U|1647
7NSO|1|A|U|1648
*
7NSO|1|A|A|2009
7NSO|1|A|G|2010

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22