J4_7NSP_001

3D structure

PDB id

7NSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7NSP|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSP_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1553

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7NSP|1|A|C|268
7NSP|1|A|C|269
*
7NSP|1|A|G|370
7NSP|1|A|A|371
7NSP|1|A|G|372
7NSP|1|A|U|373
7NSP|1|A|A|374
7NSP|1|A|G|375
*
7NSP|1|A|U|399
7NSP|1|A|G|400
7NSP|1|A|A|401
7NSP|1|A|A|402
7NSP|1|A|U|403
7NSP|1|A|A|404
7NSP|1|A|U|405
7NSP|1|A|G|406
*
7NSP|1|A|C|421
7NSP|1|A|A|422
7NSP|1|A|A|423
7NSP|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28