J4_7NSQ_013

3D structure

PDB id

7NSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7NSQ|1|a|C|183, 7NSQ|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7NSQ_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1669

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7NSQ|1|a|G|142
7NSQ|1|a|A|143
7NSQ|1|a|G|144
*
7NSQ|1|a|C|178
7NSQ|1|a|A|179
7NSQ|1|a|U|180
7NSQ|1|a|A|181
7NSQ|1|a|A|182
7NSQ|1|a|C|183
7NSQ|1|a|G|184
*
7NSQ|1|a|C|193
7NSQ|1|a|C|194
7NSQ|1|a|A|195
7NSQ|1|a|A|196
7NSQ|1|a|A|197
7NSQ|1|a|G|198
*
7NSQ|1|a|U|219
7NSQ|1|a|G|220
7NSQ|1|a|C|221

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20