J4_7NWG_003

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAUAU*AGGC*GCAUGUUGGAACAAUG*CUAUCCAG

Length

35 nucleotides

Bulged bases

7NWG|1|51|U|2369, 7NWG|1|51|A|2370, 7NWG|1|51|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|C|2365
7NWG|1|51|A|2366
7NWG|1|51|A|2367
7NWG|1|51|A|2368
7NWG|1|51|U|2369
7NWG|1|51|A|2370
7NWG|1|51|U|2371
*
7NWG|1|51|A|2389
7NWG|1|51|G|2390
7NWG|1|51|G|2391
7NWG|1|51|C|2392
*
7NWG|1|51|G|2823
7NWG|1|51|C|2824
7NWG|1|51|A|2825
7NWG|1|51|U|2826
7NWG|1|51|G|2827
7NWG|1|51|U|2828
7NWG|1|51|U|2829
7NWG|1|51|G|2830
7NWG|1|51|G|2831
7NWG|1|51|A|2832
7NWG|1|51|A|2833
7NWG|1|51|C|2834
7NWG|1|51|A|2835
7NWG|1|51|A|2836
7NWG|1|51|U|2837
7NWG|1|51|G|2838
*
7NWG|1|51|C|3850
7NWG|1|51|U|3851
7NWG|1|51|A|3852
7NWG|1|51|U|3853
7NWG|1|51|C|3854
7NWG|1|51|C|3855
7NWG|1|51|A|3856
7NWG|1|51|G|3857

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22

Chain R3

60S ribosomal protein L19

Chain d3

eL31