J4_7NWG_007

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAUCCGACUGUU*ACAAAGCA*UGUGAUUU*GAUGAACGAGAUUC

Length

43 nucleotides

Bulged bases

7NWG|1|51|A|3828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|G|3628
7NWG|1|51|A|3629
7NWG|1|51|A|3630
7NWG|1|51|U|3631
7NWG|1|51|C|3632
7NWG|1|51|C|3633
7NWG|1|51|G|3634
7NWG|1|51|A|3635
7NWG|1|51|C|3636
7NWG|1|51|U|3637
7NWG|1|51|G|3638
7NWG|1|51|U|3639
7NWG|1|51|U|3640
*
7NWG|1|51|A|3649
7NWG|1|51|C|3650
7NWG|1|51|A|3651
7NWG|1|51|A|3652
7NWG|1|51|A|3653
7NWG|1|51|G|3654
7NWG|1|51|C|3655
7NWG|1|51|A|3656
*
7NWG|1|51|U|3688
7NWG|1|51|G|3689
7NWG|1|51|U|3690
7NWG|1|51|G|3691
7NWG|1|51|A|3692
7NWG|1|51|U|3693
7NWG|1|51|U|3694
7NWG|1|51|U|3695
*
7NWG|1|51|G|3820
7NWG|1|51|A|3821
7NWG|1|51|U|3822
7NWG|1|51|G|3823
7NWG|1|51|A|3824
7NWG|1|51|A|3825
7NWG|1|51|C|3826
7NWG|1|51|G|3827
7NWG|1|51|A|3828
7NWG|1|51|G|3829
7NWG|1|51|A|3830
7NWG|1|51|U|3831
7NWG|1|51|U|3832
7NWG|1|51|C|3833

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain A3

L8

Chain n3

60s ribosomal protein l41

Chain p3

ribosomal protein eL43