J4_7NWG_010

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAAUC*GUUC*GUG*CGCC

Length

17 nucleotides

Bulged bases

7NWG|1|51|A|4589, 7NWG|1|51|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NWG|1|51|G|4587
7NWG|1|51|U|4588
7NWG|1|51|A|4589
7NWG|1|51|A|4590
7NWG|1|51|U|4591
7NWG|1|51|C|4592
*
7NWG|1|51|G|4618
7NWG|1|51|U|4619
7NWG|1|51|U|4620
7NWG|1|51|C|4621
*
7NWG|1|51|G|4676
7NWG|1|51|U|4677
7NWG|1|51|G|4678
*
7NWG|1|51|C|4712
7NWG|1|51|G|4713
7NWG|1|51|C|4714
7NWG|1|51|C|4715

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

60S RIBOSOMAL PROTEIN UL13

Chain V3

eL14